Odin, I don't think Agito had anyway of preventing data collected through research from being sent to another branch or the Arizona base. I believe if he tried, he would have been caught.
As for the remover, I could see it not have the right protocols to remove a Gigantic unit. And with Guyver 2F having the artificial control medal, we actually don't know if the remover would be able to remove her unit normally, not at all, or kill her in the process cause of the instability of her unit.