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Actually, Guyver isn't that great. The characterization is really superficial (seriously. What do we know about, for instance, Mizuki apart from her being a designated love interest slash damsel in distress? What is her purpose in the story?) the focus is and remains on a few core characters who are for all intents and purposes immortal, the pace is insanely slow, and there is no clear end goal for either heroes or villains. The way war is waged between the various parties always ends up the exact same way - duels between super-powerful warriors. There are no complex, long-term tactics. Chronos doesn't seem to know better than to send newer and stronger warriors in that nevertheless always fail in the end. ...Truthfully, I don't think Takaya has an end-game either. The only exception in all of this is Guyot, who does have a clear end-goal which he needs to meet before his time is up. More focus should have been placed on that.

Atom's powers are limited only by the skill and imagination of Chronos (and Zeus...) scientists. As long as they keep creating tougher hides, stronger bio-blasters, fitter physiologies and more spectacular superpowers, and forgetting to protect them with an anti-Aptom antibody, he's going to get periodic boosts as and when Takaya-san considers it necessary to the plot and comes up with another awesome design. Known Zoanoid powers we have not yet seen him use include sonic attacks and complete immunity to HF swords. Even Guyvers don't have that last one; if Guyot gets a G-unit, and Aptom eats an Enhanced Zerbubuth (we have seen some reproduced HZs and Z is one of them), he would be able to engage at close quarters and just trade HF blows (and we know he has better HF reach than a Guyver). I don't recall him using a barrier, but we've seen a HZ with one (that had a much bigger range, proportionate to body dimensions, than Gigantic), so it's only a matter of time until he incorporates one of those into his tendency to absorb a highly specialised Zoanoid and incorporate a far stronger version of its speciality into his general purpose form. The Libertus can punch holes through the 'regular' Hyper-Zoanoids from which his powers are derived, and a mere pair of Unus can eat a Libertus alive. (If Aptom made some clones with Unus bodies, could he create a gestalt with himself?) Whether or not there's any left of either, he has certainly not yet absorbed the strongest meal there is. I don't see why gravity attacks necessarily require a zoacrystal - at the very least, Barcas might well figure out how to install gravity orbs on a HZ, which would also enable levitation. And, Aptom just needs to learn how to make one orb to give himself a battery. Dyme was an extraordinary case, but Somlum's molecular glue could probably be replicated, given enough time and resources. It'd be pretty much a win-button against a nude foe that can't just shed and regrow affected dermis and limbs. His cloaking ability is likely an EM manipulation trick, which opens the door to Chronos developing the gamut of Magneto's repel-a-planetary-invasion capabilities. And Aptom cranking them up to eleven. Uranus bio-engineering is known to be able to bestow the abilities to teleport and to fight in a hard vacuum. We've yet to see a Zoanoid do those, but I'm pretty confident he's already got full aquatic adaptations on file.